Search results for "Conservation Genetics"

showing 10 items of 22 documents

Conservation of the endangered Mediterranean tortoise Testudo hermanni hermanni: The contribution of population genetics and historical demography

2016

International audience; Estimating the genetic variation and demographic trends of species in decline is of major concern in conservation genetics. This study contributes to understanding how historical and anthropogenic factors shape the distribution of current genetic diversity in one of the most endangered reptiles in Western Europe, the Hermann's tortoise Testudo hermanni hermanni. We used 17 microsatellite loci, chosen from a pyrosequencing library specifically developed for the subspecies to genotype eight populations distributed over about 30 sample localities covering almost the entire geographic distribution of the sub-species. The population genetic results reflect a very strong g…

0106 biological sciences0301 basic medicineConservation geneticsDemographic historyTortoiseDemographic history[SDV]Life Sciences [q-bio]PopulationEndangered speciesSettore BIO/05 - ZoologiaZoologyBiology010603 evolutionary biology01 natural sciencesTestudo hermanni03 medical and health sciences14. Life underwatereducationMicrosatellitesConservation geneticEcology Evolution Behavior and SystematicsNature and Landscape ConservationConservation genetics; Demographic history; Microsatellites; Testudo hermanni Genetic structure; Conservation issueseducation.field_of_studyTestudo hermanniEcologyConservation issuesAmbientaleMicrosatellite15. Life on landbiology.organism_classificationTestudo hermanni Genetic structureConservation genetics Demographic history Microsatellites Testudo hermanni Genetic structure Conservation issues030104 developmental biologyThreatened speciesGenetic structureGenetic structureConservation genetics
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Corncrake conservation genetics at a European scale: the impact of biogeographical and anthropological processes

2016

Abstract Understanding patterns of genetic structure, gene flow and diversity across a species range is required to determine the genetic status and viability of small peripheral populations. This is especially crucial in species distributed across a large range where spatial heterogeneity makes it difficult to predict the distribution of genetic diversity. Although biogeographical models provide expectations of how spatially structured genetic variation may be at the range scale, human disturbance may cause strong deviations from these theoretical predictions. In this study, we investigated genetic structure and demography at a pan-European scale in the corncrake Crex crex , a grassland bi…

0106 biological sciences0301 basic medicineConservation geneticsGenetic diversityeducation.field_of_studyEcologyPopulationBiology010603 evolutionary biology01 natural sciencesSpatial heterogeneity03 medical and health sciences030104 developmental biologyEvolutionary biologyGenetic variationGenetic structureThreatened speciesGenetic variabilityeducationEcology Evolution Behavior and SystematicsNature and Landscape Conservation
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Northern European Salmo trutta (L.) populations are genetically divergent across geographical regions and environmental gradients

2020

The salmonid fish Brown trout is iconic as a model for the application of conservation genetics to understand and manage local interspecific variation. However, there is still scant information about relationships between local and large-scale population structure, and to what extent geographical and environmental variables are associated with barriers to gene flow. We used information from 3,782 mapped SNPs developed for the present study and conducted outlier tests and gene–environment association (GEA) analyses in order to examine drivers of population structure. Analyses comprised >2,600 fish from 72 riverine populations spanning a central part of the species' distribution in norther…

0106 biological sciences0301 basic medicineConservation geneticsSELECTIONPopulationsalmonidCONSERVATIONlcsh:Evolutiongenotype‐environment association010603 evolutionary biology01 natural sciencesGene flow03 medical and health sciencesbrown troutLOCAL ADAPTATIONSampling designlcsh:QH359-425GeneticsGENOME SCANS14. Life underwaterSalmoeducationEcology Evolution Behavior and SystematicsLocal adaptationGenotype‐environment associationeducation.field_of_studyCLIMATE-CHANGEbiologyBROWN TROUTSTRUCTURED POPULATIONSR-PACKAGESampling (statistics)genotype-environment associationVDP::Matematikk og Naturvitenskap: 400biology.organism_classification030104 developmental biologyEvolutionary biologyoutlier testTEMPORAL-CHANGESOutlierGeneral Agricultural and Biological SciencesASCERTAINMENT BIASlocal adaptation
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Phylogeographic patterns of steppe species in Eastern Central Europe: a review and the implications for conservation

2016

The phylogeography of species associated with European steppes and extrazonal xeric grasslands is poorly understood. This paper summarizes the results of recent studies on the phylogeography and conservation genetics of animals (20 taxa of beetles, butterflies, reptiles and rodents) and flowering plants (18 taxa) of such, "steppic" habitats in Eastern Central Europe. Most species show a similar phylogeographic pattern: relatively high genetic similarity within regional groups of populations and moderate-to-high genetic distinctiveness of populations from currently isolated regions located in the studied area. This distinctiveness of populations suggests a survival here during glacial maxima…

0106 biological sciences0301 basic medicineConservation geneticsgeographyExtinctiongeography.geographical_feature_categoryEcologyEcologySteppeBiogeographyBiodiversityBiology010603 evolutionary biology01 natural sciencesBiogeography Genetics Glacial Interglacial Refugium Xeric grassland03 medical and health sciencesPhylogeography030104 developmental biologyRefugium (population biology)HabitatEcology Evolution Behavior and SystematicsNature and Landscape ConservationBiodiversity and Conservation
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Degradation in landscape matrix has diverse impacts on diversity in protected areas.

2017

Introduction: A main goal of protected areas is to maintain species diversity and the integrity of biological assemblages. Intensifying land use in the matrix surrounding protected areas creates a challenge for biodiversity conservation. Earlier studies have mainly focused on taxonomic diversity within protected areas. However, functional and especially phylogenetic diversities are less studied phenomena, especially with respect to the impacts of the matrix that surrounds protected areas. Phylogenetic diversity refers to the range of evolutionary lineages, the maintenance of which ensures that future evolutionary potential is safeguarded. Functional diversity refers to the range of ecologic…

0106 biological sciencesConservation geneticsConservation BiologyBiodiversitylcsh:MedicinemaankäyttöForestsAnimal Phylogenetics01 natural scienceslcsh:ScienceSpecies diversityConservation ScienceData ManagementMultidisciplinaryEcologyEcologyEukaryotaBiodiversityrespiratory systemta4112Terrestrial EnvironmentsPhylogeneticsGeographyHabitatVertebratesConservation GeneticsConservation geneticsResearch ArticleComputer and Information SciencesConservation of Natural ResourcesEcological MetricsForest managementAnimal phylogenetics010603 evolutionary biologyEcosystemsBirdssuojelualueetGeneticsAnimalsEcosystemEvolutionary SystematicsEcosystemTaxonomyEvolutionary BiologyLand use010604 marine biology & hydrobiologyEcology and Environmental Scienceslcsh:ROrganismsSpecies diversityland useBiology and Life SciencesSpecies Diversity15. Life on landbiodiversiteettiPhylogenetic diversity13. Climate actionConservation scienceAmniotesta1181lcsh:Qprotected areasZoologyhuman activitiesPLoS ONE
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New conservation viewpoints when plants are viewed at one level higher. Integration of phylogeographic structure, niche modeling and genetic diversit…

2019

Protection and management of closely related endangered species and subspecies at a very narrow regional scale is the origin of multiple dysfunctional conservation decisions. These include artificially increased IUCN risk assessment categories and derived consequences: poor effectiveness in allocating public and private funds or repeat of unnecessary actions/facilities. Data provided by the revisited study of a group of W Mediterranean larkspurs (Delphinium ser. Fissa), including new data on demography, niche modeling, genetic diversity and phylogeography, contributed to a new and wider analysis of causes of threat. Although current IUCN Red List regulations did not allow for assessments at…

0106 biological sciencesConservation geneticsDelphinium ser. FissaRare animalsADNEndangered speciesBiodiversityAllozymesMapatge cromosòmicSubspeciesAnimals en perill d'extincióBiodiversity conservation010603 evolutionary biology01 natural sciencescpDNAlcsh:QH540-549.5IUCN Red ListEcology Evolution Behavior and SystematicsGene mappingNature and Landscape ConservationGenetic diversityEcologybusiness.industry010604 marine biology & hydrobiologyEnvironmental resource managementBiodiversityDNAChromosome numbersBiodiversitatEnvironmental niche modellingPhylogeographyGeographylcsh:EcologybusinessConservation genetics
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The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

2013

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.

0106 biological sciencesConservation geneticsMalegenotype phenotype correlationGorillaComputingMilieux_LEGALASPECTSOFCOMPUTINGarginineGenoma humà01 natural sciencesOculocutaneous albinism type 4single nucleotide polymorphismAlbinismegenetic variabilityGorillaInbreedinggenetic conservationGenetics0303 health sciencesGenomebiologyarticlecopy number variationHigh-Throughput Nucleotide SequencingSLC45A2 geneGenomicszygosityOculocutaneous albinismFloquet de neu (Goril·la)AlbinismFemaleBiotechnologyamino acid substitutionResearch ArticleSLC45A2Gorilla gorilla gorillaHeterozygoteAlbinismMolecular Sequence Datacomparative genomic hybridizationgene sequenceConservation010603 evolutionary biology03 medical and health sciencesWestern lowland gorillabiology.animalmedicineGeneticsheterozygosityAnimalsAmino Acid Sequencegene030304 developmental biologygene identificationWhole genome sequencingnonhumanGorilla gorillaMembrane Transport ProteinsSequence Analysis DNA15. Life on landbiology.organism_classificationmedicine.diseaseGenòmicaData_GENERALMutationbiology.proteinGenèticaoculocutaneous albinismglycineMicrosatellite RepeatsBMC Genomics
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Does recognized genetic management in supportive breeding prevent genetic changes in life-history traits?

2014

International audience; Supportive breeding is one of the last resort conservation strategies to avoid species extinction. Management of captive populations is challenging because several harmful genetic processes need to be avoided. Several recommendations have been proposed to limit these deleterious effects, but empirical assessments of these strategies remain scarce. We investigated the outcome of a genetic management in a supportive breeding for the Houbara Bustard. At the phenotypic level, we found an increase over generations in the mean values of gamete production, body mass and courtship display rate. Using an animal model, we found that phenotypic changes reflected genetic changes…

0106 biological sciencesConservation geneticsquantitative genetics010603 evolutionary biology01 natural sciencesLife history theoryCaptive breedingGeneticsmedicineBustardEcology Evolution Behavior and SystematicsSelection (genetic algorithm)[SDV.GEN]Life Sciences [q-bio]/GeneticsCourtship displaybiologyEcology010604 marine biology & hydrobiologyOriginal ArticlesQuantitative geneticsbiology.organism_classificationmedicine.anatomical_structureconservation geneticsGameteta1181General Agricultural and Biological Sciencescaptive populations[ SDV.GEN ] Life Sciences [q-bio]/GeneticsDemographyEvolutionary Applications
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Community Turnover of Wood-Inhabiting Fungi across Hierarchical Spatial Scales

2014

For efficient use of conservation resources it is important to determine how species diversity changes across spatial scales. In many poorly known species groups little is known about at which spatial scales the conservation efforts should be focused. Here we examined how the community turnover of wood-inhabiting fungi is realised at three hierarchical levels, and how much of community variation is explained by variation in resource composition and spatial proximity. The hierarchical study design consisted of management type (fixed factor), forest site (random factor, nested within management type) and study plots (randomly placed plots within each study site). To examine how species richne…

Conservation geneticsBiodiversityBeta diversityhabitatlcsh:MedicineForestseastern deciduous forestsfragmentationhabitat structureSpatial and Landscape Ecologyspecies richnesslcsh:SciencebiodiversityConservation ScienceMultidisciplinaryEcologyEcologymetsänkäsittelyconservationForestryBiodiversityTerrestrial EnvironmentsWoodHabitatCommunity Ecology1181 Ecology evolutionary biologyfungal communityTemperate ForestsmanagementResearch ArticleConservation of Natural Resourcesbeta-diversityForest EcologyeducationRare speciesMycologyBiologypopulation distributionModels Biologicaleliömaantiedeplan-species diversityPLANT-SPECIES DIVERSITYForest ecologyCommunity Structure1172 Environmental sciencesdead woodnonhumanModels Statisticalspecies diversitylcsh:REcology and Environmental SciencesFungiSpecies diversityBiology and Life Sciencesympäristönsuojelulandscape15. Life on landbiodiversiteettita1181species distributionlcsh:QSpecies richnessPLoS ONE
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The Origin of Isolated Populations of the Mountain Weevil, Liparus glabrirostris—The Flagship Species for Riparian Habitats

2020

AbstractLiparus glabrirostris is one of the largest European weevils, and it has been recently proposed as the flagship species for threatened riparian habitats in the mountains. For effective conservation of its populations (and associated habitats), it is crucial to understand its history, contemporary distribution, genetic diversity and predict changes in the range, including its highly isolated populations on the Baltic coast. Here, we examined numerous populations of L. glabrirostris across almost the entire species range using phylogeography and species niche modeling (SNM) approaches. Analyses of mtDNA and nucDNA markers revealed the existence of 2 major mitochondrial lineages genera…

Conservation geneticsGenetic MarkersConservation of Natural ResourcesRange (biology)Species distributionBiologyphylogeographyspecies distribution modelingDNA MitochondrialCurculionidaeGeneticsFlagship speciesAnimalsMolecular BiologyGenetics (clinical)EcosystemRiparian zoneCell Nucleusgeographygeography.geographical_feature_categoryEcologyEnvironmental niche modellingEuropeColeopteraPhylogeographyGenetics PopulationRefugiumconservation geneticsThreatened speciesWeevilsBiotechnologyJournal of Heredity
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